Add macOS system preferences and fix package installations

- Fix claude-code package name (was incorrectly listed as claude-cli)
- Remove Node.js from installer (still required by gemini-cli)
- Add macOS system preferences configuration: auto-hide Dock, show hard disks, show all file extensions, auto-empty trash after 30 days
- Add Touch ID for sudo support (artginzburg/tap/sudo-touchid)
- Add automatic Homebrew updates (every 12 hours with upgrade and cleanup)
- Add new 's' option to configure system preferences separately

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

bin/run

@@ -18,6 +18,7 @@ while true; do
     printf "%s\n" "    hf:  Install Homebrew Formulas."
     printf "%s\n" "    hc:  Install Homebrew Casks."
     printf "%s\n" "     m:  Install Mac App Store software."
+    printf "%s\n" "     s:  Configure macOS system preferences."
     printf "%s\n" "     i:  Install all (executes all of the above steps in order)."
     printf "%s\n" "  Manage:"
     printf "%s\n" "     c:  Check status of installed software."